get_exons: Get exon annotations

In Shians/NanoMethViz: Visualise methylation data from Oxford Nanopore sequencing

Get exon annotations

Description

Helper functions are provided for obtaining exon annotations from relevant TxDb packages on Bioconductor for the construction of NanoMethResults objects.

Usage

get_cgi_mm10()

get_cgi_grcm39()

get_cgi_t2t()

get_cgi_hg19()

get_cgi_hg38()

get_exons_mm10()

get_exons_grcm39()

get_exons_hg19()

get_exons_hg38()

get_exons_t2t()

Value

tibble (data.frame) object containing exon annotation.

Examples

cgi_mm10 <- get_cgi_mm10()

cgi_GRCm39 <- get_cgi_grcm39()

cgi_t2t <- get_cgi_t2t()

# @export
cgi_hg19 <- get_cgi_hg19()

cgi_hg38 <- get_cgi_hg38()

mm10_exons <- get_exons_mm10()

grcm39_exons <- get_exons_grcm39()

hg19_exons <- get_exons_hg19()

hg38_exons <- get_exons_hg38()

t2t_exons <- get_exons_t2t()

Shians/NanoMethViz documentation built on June 13, 2025, 5:27 p.m.