CHAT-package: Clonal Heterogeneity Analysis Tool
In Shicheng-Guo/CHAT: Clonal Heterogeneity Analysis Tool
Description
Details
Author(s)
References
Description
CHAT is a collection of methods developed for researchers in the field of cancer genomics to study the intra-heterogeneity of tumors. It is applied on both high-density SNP array data and next generation sequencing data. CHAT estimates tumor purity, ploidy on the genome-wide level. It can also assign each somatic CNA or mutation its fraction of cancer cell carriers, namely, sAGP or CCF.
Details
Package: CHAT
Type: Package
Version: 1.0
Date: 2014-02-10
License: GPL(>=2)
Author(s)
Bo Li <libo@umich.edu>
References
Li et al., Genomic estimates of aneuploid content in Glioblastoma Multiforme and imporved classification. _Clinical Cancer Research_, 2012.
Li et al., A general framework for characterizing tumor subclonality using DNA sequencing and SNP array data. 2014. Submitted to Genome Biology.
Shicheng-Guo/CHAT documentation built on Oct. 30, 2019, 11:55 p.m.
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Description Details Author(s) References
Description
CHAT is a collection of methods developed for researchers in the field of cancer genomics to study the intra-heterogeneity of tumors. It is applied on both high-density SNP array data and next generation sequencing data. CHAT estimates tumor purity, ploidy on the genome-wide level. It can also assign each somatic CNA or mutation its fraction of cancer cell carriers, namely, sAGP or CCF.
Details
| Package: | CHAT |
| Type: | Package |
| Version: | 1.0 |
| Date: | 2014-02-10 |
| License: | GPL(>=2) |
Author(s)
Bo Li <libo@umich.edu>
References
Li et al., Genomic estimates of aneuploid content in Glioblastoma Multiforme and imporved classification. _Clinical Cancer Research_, 2012.
Li et al., A general framework for characterizing tumor subclonality using DNA sequencing and SNP array data. 2014. Submitted to Genome Biology.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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