NormalizeLRR: Normalize LRR values

Description Usage Arguments Value Author(s) Examples

View source: R/NormalizeLRR.R

Description

This function performs correction on both negative and positive LRR values, based on factors given in getPara().

Usage

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NormalizeLRR(x, para)

Arguments

x

numeric matrix, typically one sample from the complete data matrix returned from getSeg().

para

list, parameters returned by getPara().

Value

A new numeric data matrix with LRR normalized.

Author(s)

Bo Li

Examples

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para=getPara()
## Not run: 
data(A0SD.BAF)
data(A0SD.LRR)
chr8.baf=A0SD.BAF[A0SD.BAF[,2]==8,]
chr8.lrr=A0SD.LRR[A0SD.LRR[,2]==8,]
x=getSegChr(chr8.baf,chr8.lrr)
NormalizeLRR(x,para=para)

## End(Not run)

Shicheng-Guo/CHAT documentation built on Oct. 30, 2019, 11:55 p.m.