Description Usage Arguments Value Author(s) Examples
This function calculates the x and y coordinates of a canonical point on BAF-LRR plot.
1 | getCoord(p, x0, y0, nn, nb, nt)
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p |
numeric, proportion of aneuploid genome for a DNA segment |
x0 |
numeric, x coordinate for the Origin Cluster |
y0 |
numeric, y coordinate for the Origin Cluster |
nn |
integer, ploidy indicator. 1, diploid; 2, tetraploid; 3, hexaploid |
nb |
integer, number of minor alleles |
nt |
integer, number of total alleles |
A list of x and y coordinates.
Bo Li
1 2 3 4 5 | x0=0.05
y0=0.2
p=0.8
## Calculate the coordinates for copy-neutral-LOH segment
getCoord(p,x0,y0,1,0,2)
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