API for SimonLarsen/higana
Ontology-based analysis of genetic variants.
| Global functions | |
|---|---|
| .compute_snp_pcs | Source code |
| .get_rsvd | Source code |
| .get_svd | Source code |
| .ggplot_get_legend | Source code |
| .make_genemap | Source code |
| .pcs_from_term | Source code |
| .split_into_parts | Source code |
| annotate | Man page Source code |
| annotate.ontology | Source code |
| collapse_redundant_terms | Man page Source code |
| collapse_redundant_terms.ontology | Source code |
| collapse_terms | Man page Source code |
| collapse_terms.ontology | Source code |
| compute_gene_pcs | Man page Source code |
| compute_redundancy | Man page Source code |
| compute_redundancy.ontology | Source code |
| compute_term_pcs | Man page Source code |
| compute_term_pcs_stepdown | Man page Source code |
| extract_pcs | Man page Source code |
| filter | Man page Source code |
| filter.ontology | Source code |
| filter_obsolete | Man page Source code |
| filter_obsolete.ontology | Source code |
| filter_unannotated | Man page Source code |
| filter_unannotated.ontology | Source code |
| permute | Man page Source code |
| permute.ontology | Source code |
| plot_hierarchy | Man page Source code Source code |
| propagate_annotations | Man page Source code |
| propagate_annotations.ontology | Source code |
| read_bed | Man page Source code |
| read_gaf | Man page Source code |
| read_obo | Man page Source code |
| recompute_ancestors | Man page Source code |
| recompute_ancestors.ontology | Source code |
| rsvd | Source code |
| scale2 | Source code |
| scale_eigenstrat | Source code |
| test_genes | Man page Source code |
| test_terms | Man page Source code |
| unite_roots | Man page Source code |
| unite_roots.ontology | Source code |
