compute_term_pcs_stepdown: Compute principal components of ontology terms for stepdown...

In SimonLarsen/higana: Ontology-based analysis of genetic variants.

Description

Compute principal components of ontology terms for stepdown test.

Usage

compute_term_pcs_stepdown(
  path,
  o,
  data,
  result,
  terms = NULL,
  stepdown = "top.child",
  ...
)

Arguments

path	Path to output file.
o	An annotated ontology object.
data	A BEDData object.
result	An association result computed with test_terms or test_genes.
terms	A character vector of terms to compute PCs for. Will use all terms if not provided.
stepdown	Step-down method. One of "top.child", "top.gene".
...	Further arguments to compute_term_pcs.

SimonLarsen/higana documentation built on April 24, 2020, 7:29 a.m.