permute: Permute an ontology.
In SimonLarsen/higana: Ontology-based analysis of genetic variants.
Description
Permute an ontology.
Usage
1
permute(o, method = "genes", recompute_ancestors = TRUE, bins = 100)
Arguments
method
Permutation method.
"genes" assigns random genes to each term while preserving the number of annotations per term
and total occurences of each gene.
"sets" shuffle whole annotate sets among terms with similar number of annotations.
recompute_ancestors
Should ancestors field be recomputed after perturbation?
bins
Number of bins to use for method="sets".
An
ontology object.
SimonLarsen/higana documentation built on April 24, 2020, 7:29 a.m.
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Description
Permute an ontology.
Usage
1 | permute(o, method = "genes", recompute_ancestors = TRUE, bins = 100)
|
Arguments
method |
Permutation method. "genes" assigns random genes to each term while preserving the number of annotations per term and total occurences of each gene. "sets" shuffle whole annotate sets among terms with similar number of annotations. |
recompute_ancestors |
Should |
bins |
Number of bins to use for method="sets". |
An |
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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