read_bed: Open PLINK .bed file and create gene mapping.
In SimonLarsen/higana: Ontology-based analysis of genetic variants.
Description
Usage
Arguments
Value
Description
Open PLINK .bed file and create gene mapping.
Usage
1
read_bed(path, ref = "hg19", maxgap = 10000, select = "all")
Arguments
path
Path to .bed file with or without extension.
ref
Reference genome. One of "hg18", "hg19", "hg38", "mm8", "mm9", "mm10", "rn5", "rn6".
maxgap
Maximum allowed distance between SNP and gene.
select
How should SNPs near multiple genes by mapped? Use "all" to use all hits. Use "nearest" to use only nearest gene.
Value
A BEDData object.
SimonLarsen/higana documentation built on April 24, 2020, 7:29 a.m.
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Description Usage Arguments Value
Description
Open PLINK .bed file and create gene mapping.
Usage
1 | read_bed(path, ref = "hg19", maxgap = 10000, select = "all")
|
Arguments
path |
Path to .bed file with or without extension. |
ref |
Reference genome. One of "hg18", "hg19", "hg38", "mm8", "mm9", "mm10", "rn5", "rn6". |
maxgap |
Maximum allowed distance between SNP and gene. |
select |
How should SNPs near multiple genes by mapped? Use "all" to use all hits. Use "nearest" to use only nearest gene. |
Value
A BEDData object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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