collapse_redundant_terms: Collapse terms whose annotations are redundant with respect...
In SimonLarsen/higana: Ontology-based analysis of genetic variants.
Description
Usage
Arguments
Value
Description
Collapses non-root and non-leaf terms in the ontology whose annotations are redundant
with respect to their children. Ensures that the annotations of a term is a proper superset
of the union of annotations of its children.
Usage
1
collapse_redundant_terms(o, threshold = 1)
Arguments
o
An annotated ontology object.
threshold
Filter terms with redundancy (maximum Jaccard index) above this threshold.
Value
A filtered ontology object.
SimonLarsen/higana documentation built on April 24, 2020, 7:29 a.m.
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Description Usage Arguments Value
Description
Collapses non-root and non-leaf terms in the ontology whose annotations are redundant with respect to their children. Ensures that the annotations of a term is a proper superset of the union of annotations of its children.
Usage
1 | collapse_redundant_terms(o, threshold = 1)
|
Arguments
o |
An annotated |
threshold |
Filter terms with redundancy (maximum Jaccard index) above this threshold. |
Value
A filtered ontology object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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