getPathDescription-methods: Extract description for enriched pathways from query result...

Description Usage Arguments Value Examples

Description

This function extracts the pathway description from geneSet object.

Usage

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getPathDescription(res, ...)

## S4 method for signature 'loci2pathResult'
getPathDescription(res, geneset)

Arguments

res

query result from function query.egset.list()

...

additional params

geneset

A geneSet object

Value

a vector of gene set description from geneSet description slot

Examples

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result <- query(query.gr=query.gr, 
  loci=eset.list, path=biocarta)
path.des <- getPathDescription(result, biocarta)

StanleyXu/egquery documentation built on Sept. 12, 2019, 9:35 a.m.