getWordcloud-methods: Plot word cloud using frequent terms of pathways and genes

In StanleyXu/egquery: Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs

Description

This function draw the enrichment heatmap using wordcloud package.

Usage

getWordcloud(res, ...)

## S4 method for signature 'loci2pathResult'
getWordcloud(res, min.freq.tissue = 5,
  min.freq.gset = 5, max.words = 50)

Arguments

res	query result from function query.egset.list()
...	additional params
min.freq.tissue	minimum frequency of tissue/cell to be plotted in the word cloud
min.freq.gset	minimum frequency of geneset to be plotted in the word cloud
max.words	maximum words to be generated

Value

empty

Examples

result <- query(query.gr=query.gr, 
  loci=eset.list, path=biocarta)
getWordcloud(result, min.freq.tissue=2, min.freq.gset=1)

StanleyXu/egquery documentation built on Sept. 12, 2019, 9:35 a.m.