query.gr: eQTL geneset enrichment query demo data
In StanleyXu/egquery: Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs
Description
Usage
Format
Details
Examples
Description
Demo Data to show how to perform eQTL-geneset enrichment query.
Usage
1
data(loci2path.demo)
Format
An object of class GRanges of length 47.
Details
eqtl.set.list A list of eQTLset objects; eQTL data are collected from
GTeX.
biocarta A Geneset object; Geneset are from Broad Institute's MSigDB:
curated gene set, category 'cp': BIOCARTA
query.gr A Genomic Region object; Query regions are from immunoBase,
crohn's disease.
Examples
1
data(loci2path.demo)
StanleyXu/egquery documentation built on Sept. 12, 2019, 9:35 a.m.
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Description Usage Format Details Examples
Description
Demo Data to show how to perform eQTL-geneset enrichment query.
Usage
1 | data(loci2path.demo)
|
Format
An object of class GRanges of length 47.
Details
eqtl.set.list A list of eQTLset objects; eQTL data are collected from
GTeX.
biocarta A Geneset object; Geneset are from Broad Institute's MSigDB:
curated gene set, category 'cp': BIOCARTA
query.gr A Genomic Region object; Query regions are from immunoBase,
crohn's disease.
Examples
1 | data(loci2path.demo)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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