query.gr: eQTL geneset enrichment query demo data

Description Usage Format Details Examples

Description

Demo Data to show how to perform eQTL-geneset enrichment query.

Usage

1
data(loci2path.demo)

Format

An object of class GRanges of length 47.

Details

eqtl.set.list A list of eQTLset objects; eQTL data are collected from GTeX.

biocarta A Geneset object; Geneset are from Broad Institute's MSigDB: curated gene set, category 'cp': BIOCARTA

query.gr A Genomic Region object; Query regions are from immunoBase, crohn's disease.

Examples

1
data(loci2path.demo)

StanleyXu/egquery documentation built on Sept. 12, 2019, 9:35 a.m.