Man pages for SteRoe/PatternMatchR
A Tool for Visualization of Different Traits in Heatmaps
| brush_action_condHM_P_Val | brush_action_condHM_P_Val |
| brush_action_fullHM | brush_action_fullHM |
| brush_action_fullHM_LogFC | brush_action_fullHM_LogFC |
| calculateDistanceNeigboursProbes | #' updateTxtClusterOut #' generates summary text after... |
| calculateEpigeneticEffectsAdjusted | calculate multiple models in parallel |
| CalculateModels | calculate models |
| checklistResultP_Val_DeltaMeth_NValidity | checklistResultP_Val_DeltaMeth_NValidity checks for validity... |
| checkResultP_Val_cg | checkResultP_Val_cg checks whether rownames of results start... |
| click_action_fullHM | click_action_fullHM |
| click_action_fullHM_LogFC | click_action_fullHM_LogFC |
| combinedDFInteractiveHeatMap | creates a regular heatmap |
| combinedDFInteractiveHeatMapLogFC | creates a regular heatmap based on p-values |
| delete.na | delete.na deletes rows with all NA from data.frame DF |
| dot-onAttach | .onAttach() |
| emptyHM | emptyHM creates an empty heatmap |
| extractMantissaExponent | extractMantissaExponent |
| findInFiles | findInFiles finds strings in a bunch of files |
| getAvailNForP_VALBorderParallel | getAvailNForP_VALBorderParallel counts number of remaining... |
| getBinaryFactorialVars | getBinaryFactorialVars |
| getClustergramLong | getClustergramLong produces a clustergram |
| getClusterMedoids | getClusterMedoids gets Medoids of earlier produced clusters;... |
| getClustersTable | getClustersTable gets a table earlier produced clusters |
| getClustResFast | getClustResFast calculates hierarchical clustering using... |
| getDend | getDend gets a dendrogram with clustering results |
| getDimensionsForPlotlySPLOM | structure of sessionVariables for SPLOM: detailed original... |
| getDistMat | getDistMat calculates distance matrix using parallelDist |
| getEmptyPlot | getEmptyPlot |
| getlistOfResultsDF | getlistOfResultsDF gets list of result data.frame from folder |
| getMedoidsTable | getMedoidsTable gets a table with Medoids of earlier produced... |
| getNForDMBorder | getNForDMBorder |
| getNForNBorder | getNForNBorder |
| getNForP_ValBorder | getNForP_ValBorder |
| getPHENODF | getPHENODF loads a pheno DF for a certain PHENOFileName |
| getPReducedTraitData | getPReducedTraitData reduces data in structure... |
| getProbeReducedDataStructure | getProbeReducedDataStructure delivers clustering results for... |
| getProbeReducedDataStructureWOGap | getProbeReducedDataStructureWOGap delivers clustering results... |
| getReducedP_Valdf | getReducedP_ValMatrix counts and gets back traits with at... |
| getResultDfP_D_N | combinedDFP_Val_Labels$dfP_Val - data frame with p-values... |
| getSPLOM | getSPLOM |
| getTraitReducedDataStructure | getTraitReducedDataStructure delivers clustering results for... |
| getYoungestFile | getYoungestFile gets youngest (file date and time) file from... |
| GlobalSelection_SERVER | getSelectedOriginalData |
| hover_action_fullHM | hover_action_fullHM |
| hover_action_fullHM_LogFC | hover_action_fullHM_LogFC |
| is.valid | is.valid checks, whether an R object (x) is valid (not NULL)... |
| loadDir | loadDir |
| loadDNAm | loadDNAm loads measured beta values from file... |
| loadFolderDFList | loadFolderDFList loads list of data.frame from folder |
| loadObjects | loadObjects loads globally needed objects (methylation matrix... |
| loadObjectsForCalculation | load required data for model calculation |
| loadResultDF | structure of sessionVariables: |
| loadResultFile | loadResultFile |
| loadtraitDFs | loadtraitDFs loads and concatenates corresponding data.frames... |
| mergeDFP_Val_Labels | mergeDFP_Val_Labels merges data.frames out of sessionVariable... |
| originalWd | structure of sessionVariables: |
| PatternMatchRApp | starts the app |
| removeAdjFromColname | removeAdjFromColname |
| removeTraitsMinN | removeTraitsMinN removes CpG with casecount < minN from... |
| updateTxtLoadOut | updateTxtLoadOut |
| updateTxtMergeOut | updateTxtMergeOut |
| updateTxtpReduceOut | updateTxtpReduceOut generates summary text after p-value... |
