brush_action_condHM_P_Val | brush_action_condHM_P_Val |
brush_action_fullHM_P_Val | brush_action_fullHM_P_Val |
calculateDistanceNeigboursProbes | #' updateTxtClusterOut #' generates summary text after... |
checklistResultP_Val_DeltaMeth_NValidity | checklistResultP_Val_DeltaMeth_NValidity checks for validity... |
checkResultP_Val_cg | checkResultP_Val_cg checks whether rownames of results start... |
click_action_fullHM_P_Val | click_action_fullHM_P_Val |
combinedDFInteractiveHeatMapDMlogFC | creates a regular heatmap based on log fold change values |
combinedDFInteractiveHeatMapP_Val | creates a regular heatmap based on p-values |
delete.na | delete.na deletes rows with all NA from data.frame DF |
dot-onAttach | .onAttach() |
emptyHM | emptyHM creates an empty heatmap |
extractMantissaExponent | extractMantissaExponent |
findInFiles | findInFiles finds strings in a bunch of files |
getAvailNForP_VALBorder | getAvailNForP_VALBorder counts traits with at least 2... |
getAvailNForP_VALBorderParallel | getAvailNForP_VALBorderParallel counts number of remaining... |
getBinaryFactorialVars | getBinaryFactorialVars |
getClustersTable | getClustersTable gets a table earlier produced clusters |
getClustResFast | getClustResFast calculates hierarchical clustering using... |
getDendTraits | getDendTraits gets a dendrogram with clustering results of... |
getDimensionsForPlotlySPLOM | structure of sessionVariables for SPLOM: detailed original... |
getDistMat | getDistMat calculates distance matrix using parallelDist |
getEmptyPlot | getEmptyPlot |
getlistOfResultsDF | getlistOfResultsDF gets list of result data.frame from folder |
getMedoidsTable | getMedoidsTable gets a table with Medoids of earlier produced... |
getNForDMBorder | getNForDMBorder |
getNForNBorder | getNForNBorder |
getNForP_ValBorder | getNForP_ValBorder |
getPHENODF | getPHENODF loads a pheno DF for a certain PHENOFileName |
getplotClustergramTraitsLong | getplotClustergramTraitsLong produces a clustergram for... |
getPReducedTraitData | reduceTraitData reduces data in structure... |
getReducedP_Valdf | getReducedP_ValMatrix counts and gets back traits with at... |
getResultDfP_D_N | combinedDFP_Val_Labels$dfP_Val - data frame with p-values... |
getSPLOM | getSPLOM |
getTraitClusterMedoids | getTraitClusterMedoids gets Medoids of earlier produced... |
getTraitReducedData | getTraitReducedData gets a list with data structure for... |
getTraitSubsetcombinedDFP_Val_Labels | getTraitSubsetcombinedDFP_Val_Labels omits traits from... |
getYoungestFile | getYoungestFile gets youngest (file date and time) file from... |
hover_action_fullHM_P_Val | hover_action_fullHM_P_Val |
is.valid | is.valid checks, whether an R object (x) is valid (not NULL)... |
loadDir | loadDir |
loadDNAm | loadDNAm loads measured beta values from file... |
loadFolderDFList | loadFolderDFList loads list of data.frame from folder |
loadObjects | loadObjects loads globally needed objects (methylation matrix... |
loadResultDF | structure of sessionVariables: |
loadResultFile | loadResultFile |
loadtraitDFs | loadtraitDFs loads and concatenates corresponding data.frames... |
mergeDFP_Val_Labels | mergeDFP_Val_Labels merges data.frames out of sessionVariable... |
originalWd | structure of sessionVariables: |
PatternMatchRApp | starts the app |
plotCombinedCondDWHM_P_Val | plotCombinedCondDWHM_P_Val plots condensed distance weighted... |
plotCombinedCondHM_P_Val | plotCombinedCondHM_P_Val plots condensed heatmap |
plotCombinedDWHM_P_Val | plotCombinedDWHM_P_Val plots distance weighted heatmap |
removeAdjFromColname | removeAdjFromColname |
removeTraitsMinN | removeTraitsMinN removes CpG with casecount < minN from... |
updateTxtLoadOut | updateTxtLoadOut |
updateTxtMergeOut | updateTxtMergeOut |
updateTxtpReduceOut | updateTxtpReduceOut generates summary text after p-value... |
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