Man pages for SteRoe/PatternMatchR
A Tool for Visualization of Different Traits in Heatmaps

brush_action_condHM_P_Valbrush_action_condHM_P_Val
brush_action_fullHM_P_Valbrush_action_fullHM_P_Val
calculateDistanceNeigboursProbes#' updateTxtClusterOut #' generates summary text after...
checklistResultP_Val_DeltaMeth_NValiditychecklistResultP_Val_DeltaMeth_NValidity checks for validity...
checkResultP_Val_cgcheckResultP_Val_cg checks whether rownames of results start...
click_action_fullHM_P_Valclick_action_fullHM_P_Val
combinedDFInteractiveHeatMapDMlogFCcreates a regular heatmap based on log fold change values
combinedDFInteractiveHeatMapP_Valcreates a regular heatmap based on p-values
delete.nadelete.na deletes rows with all NA from data.frame DF
dot-onAttach.onAttach()
emptyHMemptyHM creates an empty heatmap
extractMantissaExponentextractMantissaExponent
findInFilesfindInFiles finds strings in a bunch of files
getAvailNForP_VALBordergetAvailNForP_VALBorder counts traits with at least 2...
getAvailNForP_VALBorderParallelgetAvailNForP_VALBorderParallel counts number of remaining...
getBinaryFactorialVarsgetBinaryFactorialVars
getClustersTablegetClustersTable gets a table earlier produced clusters
getClustResFastgetClustResFast calculates hierarchical clustering using...
getDendTraitsgetDendTraits gets a dendrogram with clustering results of...
getDimensionsForPlotlySPLOMstructure of sessionVariables for SPLOM: detailed original...
getDistMatgetDistMat calculates distance matrix using parallelDist
getEmptyPlotgetEmptyPlot
getlistOfResultsDFgetlistOfResultsDF gets list of result data.frame from folder
getMedoidsTablegetMedoidsTable gets a table with Medoids of earlier produced...
getNForDMBordergetNForDMBorder
getNForNBordergetNForNBorder
getNForP_ValBordergetNForP_ValBorder
getPHENODFgetPHENODF loads a pheno DF for a certain PHENOFileName
getplotClustergramTraitsLonggetplotClustergramTraitsLong produces a clustergram for...
getPReducedTraitDatareduceTraitData reduces data in structure...
getReducedP_ValdfgetReducedP_ValMatrix counts and gets back traits with at...
getResultDfP_D_NcombinedDFP_Val_Labels$dfP_Val - data frame with p-values...
getSelectedOriginalDatagetSelectedOriginalData
getSPLOMgetSPLOM
getTraitClusterMedoidsgetTraitClusterMedoids gets Medoids of earlier produced...
getTraitReducedDatagetTraitReducedData gets a list with data structure for...
getTraitSubsetcombinedDFP_Val_LabelsgetTraitSubsetcombinedDFP_Val_Labels omits traits from...
getYoungestFilegetYoungestFile gets youngest (file date and time) file from...
hover_action_fullHM_P_Valhover_action_fullHM_P_Val
is.validis.valid checks, whether an R object (x) is valid (not NULL)...
loadDirloadDir
loadDNAmloadDNAm loads measured beta values from file...
loadFolderDFListloadFolderDFList loads list of data.frame from folder
loadObjectsloadObjects loads globally needed objects (methylation matrix...
loadResultDFstructure of sessionVariables:
loadResultFileloadResultFile
loadtraitDFsloadtraitDFs loads and concatenates corresponding data.frames...
mergeDFP_Val_LabelsmergeDFP_Val_Labels merges data.frames out of sessionVariable...
originalWdstructure of sessionVariables:
PatternMatchRAppstarts the app
plotCombinedCondDWHM_P_ValplotCombinedCondDWHM_P_Val plots condensed distance weighted...
plotCombinedCondHM_P_ValplotCombinedCondHM_P_Val plots condensed heatmap
plotCombinedDWHM_P_ValplotCombinedDWHM_P_Val plots distance weighted heatmap
removeAdjFromColnameremoveAdjFromColname
removeTraitsMinNremoveTraitsMinN removes CpG with casecount < minN from...
updateTxtLoadOutupdateTxtLoadOut
updateTxtMergeOutupdateTxtMergeOut
updateTxtpReduceOutupdateTxtpReduceOut generates summary text after p-value...
SteRoe/PatternMatchR documentation built on July 1, 2024, 10:09 p.m.