Files in SteRoe/PatternMatchR
A Tool for Visualization of Different Traits in Heatmaps
.Rbuildignore
.github/workflows/r.yml
.gitignore
CITATION.cff
DESCRIPTION
LICENSE
NAMESPACE
PatternMatchR.Rproj
R/Clustering.R
R/CombinedData.R
R/ResultData.R
R/SPLOM.R
R/reducePValue.R
R/reduceTrait.R
R/server.R
R/ui.R
R/util.R
README.md
inst/config.yml
inst/extdata/data1/config.yml
inst/extdata/data1/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/data11/config.yml
inst/extdata/data11/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/data12/config.yml
inst/extdata/data12/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/data2/config.yml
inst/extdata/data2/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/data21/config.yml
inst/extdata/data21/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/data22/config.yml
inst/extdata/data22/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/data3/config.yml
inst/extdata/data3/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/knownCpG.txt
inst/extdata/knownTraits.txt
inst/extdata/methylation_example_short.csv
inst/extdata/traits_short.csv
man/PatternMatchRApp.Rd
man/brush_action_condHM_P_Val.Rd
man/brush_action_fullHM_P_Val.Rd
man/calculateDistanceNeigboursProbes.Rd
man/checkResultP_Val_cg.Rd
man/checklistResultP_Val_DeltaMeth_NValidity.Rd
man/click_action_fullHM_P_Val.Rd
man/combinedDFInteractiveHeatMapDMlogFC.Rd
man/combinedDFInteractiveHeatMapP_Val.Rd
man/delete.na.Rd
man/dot-onAttach.Rd
man/emptyHM.Rd
man/extractMantissaExponent.Rd
man/findInFiles.Rd
man/getAvailNForP_VALBorder.Rd
man/getAvailNForP_VALBorderParallel.Rd
man/getBinaryFactorialVars.Rd
man/getClustResFast.Rd
man/getClustersTable.Rd
man/getDendTraits.Rd
man/getDimensionsForPlotlySPLOM.Rd
man/getDistMat.Rd
man/getEmptyPlot.Rd
man/getMedoidsTable.Rd
man/getNForDMBorder.Rd
man/getNForNBorder.Rd
man/getNForP_ValBorder.Rd
man/getPHENODF.Rd
man/getPReducedTraitData.Rd
man/getReducedP_Valdf.Rd
man/getResultDfP_D_N.Rd
man/getSPLOM.Rd
man/getTraitClusterMedoids.Rd
man/getTraitReducedData.Rd
man/getTraitSubsetcombinedDFP_Val_Labels.Rd
man/getYoungestFile.Rd
man/getlistOfResultsDF.Rd
man/getplotClustergramTraitsLong.Rd
man/hover_action_fullHM_P_Val.Rd
man/is.valid.Rd
man/loadDNAm.Rd
man/loadDir.Rd
man/loadFolderDFList.Rd
man/loadObjects.Rd
man/loadResultDF.Rd
man/loadResultFile.Rd
man/loadtraitDFs.Rd
man/mergeDFP_Val_Labels.Rd
man/originalWd.Rd
man/plotCombinedCondDWHM_P_Val.Rd
man/plotCombinedCondHM_P_Val.Rd
man/plotCombinedDWHM_P_Val.Rd
man/removeAdjFromColname.Rd
man/removeTraitsMinN.Rd
man/updateTxtLoadOut.Rd
man/updateTxtMergeOut.Rd
man/updateTxtpReduceOut.Rd
vignettes/.gitignore
vignettes/PatternMatchR.Rmd
vignettes/PatternMatchR.html
