Files in SteRoe/PatternMatchR
A Tool for Visualization of Different Traits in Heatmaps

.Rbuildignore
.github/workflows/r.yml
.gitignore
CITATION.cff
DESCRIPTION
LICENSE
NAMESPACE
PatternMatchR.Rproj
R/Clustering.R R/CombinedData.R R/ResultData.R R/SPLOM.R R/plotHM.R R/reducePValue.R R/reduceTrait.R R/server.R R/ui.R R/util.R README.md
inst/config.yml
inst/extdata/data1/config.yml
inst/extdata/data1/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/data11/config.yml
inst/extdata/data11/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/data12/config.yml
inst/extdata/data12/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/data2/config.yml
inst/extdata/data2/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/data21/config.yml
inst/extdata/data21/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/data22/config.yml
inst/extdata/data22/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/data3/config.yml
inst/extdata/data3/listResultP_Val_DeltaMeth_N.RDS
inst/extdata/knownCpG.txt
inst/extdata/knownTraits.txt
inst/extdata/methylation_example_short.csv
inst/extdata/traits_short.csv
man/PatternMatchRApp.Rd man/brush_action_condHM_P_Val.Rd man/brush_action_fullHM_P_Val.Rd man/calculateDistanceNeigboursProbes.Rd man/checkResultP_Val_cg.Rd man/checklistResultP_Val_DeltaMeth_NValidity.Rd man/click_action_fullHM_P_Val.Rd man/combinedDFInteractiveHeatMapDMlogFC.Rd man/combinedDFInteractiveHeatMapP_Val.Rd man/delete.na.Rd man/dot-onAttach.Rd man/emptyHM.Rd man/extractMantissaExponent.Rd man/findInFiles.Rd man/getAvailNForP_VALBorder.Rd man/getAvailNForP_VALBorderParallel.Rd man/getBinaryFactorialVars.Rd man/getClustResFast.Rd man/getClustersTable.Rd man/getDendTraits.Rd man/getDimensionsForPlotlySPLOM.Rd man/getDistMat.Rd man/getEmptyPlot.Rd man/getMedoidsTable.Rd man/getNForDMBorder.Rd man/getNForNBorder.Rd man/getNForP_ValBorder.Rd man/getPHENODF.Rd man/getPReducedTraitData.Rd man/getReducedP_Valdf.Rd man/getResultDfP_D_N.Rd man/getSPLOM.Rd man/getSelectedOriginalData.Rd man/getTraitClusterMedoids.Rd man/getTraitReducedData.Rd man/getTraitSubsetcombinedDFP_Val_Labels.Rd man/getYoungestFile.Rd man/getlistOfResultsDF.Rd man/getplotClustergramTraitsLong.Rd man/hover_action_fullHM_P_Val.Rd man/is.valid.Rd man/loadDNAm.Rd man/loadDir.Rd man/loadFolderDFList.Rd man/loadObjects.Rd man/loadResultDF.Rd man/loadResultFile.Rd man/loadtraitDFs.Rd man/mergeDFP_Val_Labels.Rd man/originalWd.Rd man/plotCombinedCondDWHM_P_Val.Rd man/plotCombinedCondHM_P_Val.Rd man/plotCombinedDWHM_P_Val.Rd man/removeAdjFromColname.Rd man/removeTraitsMinN.Rd man/updateTxtLoadOut.Rd man/updateTxtMergeOut.Rd man/updateTxtpReduceOut.Rd
vignettes/.gitignore
vignettes/PatternMatchR.Rmd
vignettes/PatternMatchR.html
SteRoe/PatternMatchR documentation built on July 1, 2024, 10:09 p.m.