Files in StoXProject/RstoxFDA
Fisheries Dependent Analysis with RstoX

.Rbuildignore

.github/workflows/check-full.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

DESCRIPTION

LICENSE

NAMESPACE

NEWS

NEWS.md R/DataPrep.R R/FDIRfactors-datadoc.R R/GSAsubAreas-datadoc.R R/GearGroupFdirTable-datadoc.R R/ICESareas-datadoc.R R/ICESdivision-datadoc.R R/ICESrectangles-datadoc.R R/ICESsubArea-datadoc.R R/ICESsubDivision-datadoc.R R/ICESunit-datadoc.R R/NAFOareas-datadoc.R R/RecaCatchAtAgeExample-datadoc.R R/RecaFormatChecks.R R/RecaReport.R R/RecaWrap.R R/RstoxFDA-package.R R/StoxAnalysisFunctions.R R/StoxBaselineFunctions.R R/StoxBioticExample-datadoc.R R/StoxDataTypes.R R/StoxLandingExample-datadoc.R R/StoxPlots.R R/StoxReportFunctions.R R/activityCensus-datadoc.R R/auxfunctions.R R/backwardCompatibility.R R/bioticdiff.R R/ecaOuputputConversion.R R/io.R R/kommuner2022-datadoc.R R/landings-datadoc.R R/landingsAnalyses.R R/locationsFdir2017-datadoc.R R/locationsFdir2018-datadoc.R R/locodes2020-datadoc.R R/logbookAnalyses.R R/mainareaFdir2017-datadoc.R R/mainareaFdir2018-datadoc.R R/maps.R R/metier4table-datadoc.R R/metier5table-datadoc.R R/metier6table-datadoc.R R/metierAnnotation.R R/outlierDetection.R R/pkgname.R R/recaDAta-datadoc.R R/recaResult-datadoc.R R/samples-datadoc.R

README

README.md

RstoxFDA.Rproj

data/FDIR.factors.VIII.2022.rda

data/GSAsubArea.rda

data/GearGroupFdirTable.rda

data/ICESareas.rda

data/ICESdivision.rda

data/ICESrectangles.rda

data/ICESsubArea.rda

data/ICESsubDivision.rda

data/ICESunit.rda

data/NAFOareas.rda

data/RecaCatchAtAgeExample.rda

data/StoxBioticDataExample.rda

data/StoxLandingDataExample.rda

data/activityCensus.rda

data/catchsamples.rda

data/kommuner2022.rda

data/landings.rda

data/locationsFdir2017.rda

data/locationsFdir2018.rda

data/mainareaFdir2017.rda

data/mainareaFdir2018.rda

data/metier4table.rda

data/metier5table.rda

data/metier6table.rda

data/portcodes2020.rda

data/recaDataExample.rda

data/recaPrediction.rda

inst/configFileExamples/metiertable.txt

inst/dataPrepScripts/README.txt

inst/dataPrepScripts/prepActivityCensus.R inst/dataPrepScripts/prepCodeLists.R inst/dataPrepScripts/prepConversionFactors.R inst/dataPrepScripts/prepEcaExampleData.R inst/dataPrepScripts/prepEcaTestResources.R inst/dataPrepScripts/prepMetierTables.R inst/dataPrepScripts/prepSpatialResources.R inst/dataPrepScripts/prepStoxDataExamples.R inst/docs/documentation_landingsdata_FDIR.2021_norwegian.pdf

inst/docs/documentation_landingsdata_archive_norwegian.csv

inst/docs/documentation_landingsdata_lss.2016_norwegian.pdf

inst/docs/documentation_logbookdata_lst.xls

inst/docs/selected_code_lists_landingsdata_archive_norwegian.xlsx

inst/docs/supplementary_documentation_landingsdata_archive_norwegian.csv

inst/extdata/functionArguments.rds

inst/formats/processDataSchema.json

inst/testresources/AgeErrorHirstEtAl2012.txt

inst/testresources/AgeMalformed.txt

inst/testresources/AgeMalformed2.txt

inst/testresources/AgeNonSym.txt

inst/testresources/RecaCatchAtAgePlusGroupIsse.rds

inst/testresources/StoxBioticData.rds

inst/testresources/StoxBioticDataMock.txt

inst/testresources/StoxBioticDelpr.rds

inst/testresources/StoxLandingData.rds

inst/testresources/areaPosError.txt

inst/testresources/biotic_v3_example.xml

inst/testresources/biotic_v3_lengthmeasurements.xml

inst/testresources/biotic_v3_producttypes.xml

inst/testresources/classificationError.txt

inst/testresources/coastalCodStrata.txt

inst/testresources/conversionFactors.txt

inst/testresources/conversionFactorsDuplicates.txt

inst/testresources/ecaResult.rds

inst/testresources/fishdata.rda

inst/testresources/gearfactor.txt

inst/testresources/gearfactor_error.txt

inst/testresources/gearfactor_errorkeys.txt

inst/testresources/geargroupsBiotic.txt

inst/testresources/geargroupsLandings.txt

inst/testresources/land_cod_2021_extract.rds

inst/testresources/landing.xml

inst/testresources/landings.rda

inst/testresources/landings_trimmed_2018.lss

inst/testresources/landingsvariants/landing.xml

inst/testresources/landingsvariants/landing_duplicates.xml

inst/testresources/landingsvariants/landing_duplicates_several.xml

inst/testresources/landingsvariants/landings_csv.csv

inst/testresources/landingsvariants/lss_2005.psv

inst/testresources/landingsvariants/lss_2017.psv

inst/testresources/landingsvariants/lss_2018.psv

inst/testresources/landingsvariants/lss_duplicates.psv

inst/testresources/landingsvariants/lss_landingsapi_20220221.psv

inst/testresources/landingsvariants/openfdir.2021.csv

inst/testresources/lengthConversion.txt

inst/testresources/lengthConversionDup.txt

inst/testresources/logb_cod_2021_extract.rds

inst/testresources/logbooks_mock_2018.psv

inst/testresources/logbookvariants/logbook.lst

inst/testresources/logbookvariants/logbook_wo_header.lst

inst/testresources/mainarea_error.txt

inst/testresources/mainarea_error2.txt

inst/testresources/mainarea_fdir_from_2018_compl.txt

inst/testresources/mainarea_fdir_from_2018_incl.txt

inst/testresources/mainarea_neighbour.txt

inst/testresources/mainarea_neighbour_correct_codes.txt

inst/testresources/meanWeightReportIssue.rds

inst/testresources/metiermapping_example.txt

inst/testresources/metiermapping_example_commanot.txt

inst/testresources/metiermapping_example_commanot_target.txt

inst/testresources/metiermapping_example_error.txt

inst/testresources/metiermapping_example_simple.txt

inst/testresources/metiertable_unmeshed.txt

inst/testresources/oldstoxprepreca

inst/testresources/recaPredictionDecomp.rds

inst/testresources/recaPredictionFlat.rds

inst/testresources/startStopExample.txt

inst/testresources/stocksplitpred.rds

pkgdown/_pkgdown.yml

tests/testAgainstStoxPrep.R tests/tinytest.R vignettes/StoX-data-preparation.Rmd vignettes/Stox-FDA-overview.Rmd vignettes/stox-reca.Rmd

StoXProject/RstoxFDA documentation built on Jan. 13, 2024, 12:32 a.m.

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StoXProject/RstoxFDA
Fisheries Dependent Analysis with RstoX

Files in StoXProject/RstoxFDA
Fisheries Dependent Analysis with RstoX

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StoXProject/RstoxFDA Fisheries Dependent Analysis with RstoX

Files in StoXProject/RstoxFDA Fisheries Dependent Analysis with RstoX

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StoXProject/RstoxFDA
Fisheries Dependent Analysis with RstoX

Files in StoXProject/RstoxFDA
Fisheries Dependent Analysis with RstoX