Files in SydneyBioX/scFeatures
scFeatures: Multi-view representations of single-cell and spatial data for disease outcome prediction

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/data.R R/helper_CCI.R R/helper_bulk_expression.R R/helper_celltype_expression.R R/helper_pathway.R R/helper_proportion.R R/helper_spatial_metrics.R R/run_scfeatures.R R/utils.R R/wrapper_run_scfeatures.R README.md
_pkgdown.yml
data/example_scrnaseq.RData
data/scfeatures_result.RData
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docs/articles/index.html
docs/articles/scFeatures_associationstudy.html
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inst/CITATION
inst/extdata/figure/CCI_example_figures.png
inst/extdata/figure/aggregatedgene_example_figures.png
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inst/extdata/output_report.Rmd
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inst/sticker.png
man/example_scrnaseq.Rd man/get_num_cell_per_spot.Rd man/remove_mito_ribo.Rd man/run_CCI.Rd man/run_L_function.Rd man/run_Morans_I.Rd man/run_association_study_report.Rd man/run_celltype_interaction.Rd man/run_gene_cor.Rd man/run_gene_cor_celltype.Rd man/run_gene_mean.Rd man/run_gene_mean_celltype.Rd man/run_gene_prop.Rd man/run_gene_prop_celltype.Rd man/run_nn_correlation.Rd man/run_pathway_gsva.Rd man/run_pathway_mean.Rd man/run_pathway_prop.Rd man/run_proportion_logit.Rd man/run_proportion_ratio.Rd man/run_proportion_raw.Rd man/scFeatures.Rd man/scfeatures_result.Rd
vignettes/.gitignore
vignettes/scFeatures_overview.Rmd
SydneyBioX/scFeatures documentation built on Nov. 30, 2024, 6:40 p.m.