biplot_bca: Draw a between class analysis (BCA) plot.

In TBrach/MicrobiomeX: eXtended Functions for Microbiome Analysis and Visualization

Description

Draw a between class analysis (BCA) plot.

Usage

biplot_bca(physeq, factor = "Enterotype", color = "Enterotype",
  label = "Genus", ntaxa = 10)

Arguments

physeq	Phyloseq object.
factor	Name of the sample metadata column to perform BCA.
color	Name of the sample metadata column to color the samples with.
label	Taxonomic annotation of the taxon to be shown in the biplot.
ntaxa	Maximum number of driver taxa to display. Actual number shown might be lower than the specified number.

Value

None.

Examples

## Not run: 
biplot_bca(physeq, factor = "Enterotype", color = "Enterotype", label = "Genus")
biplot_bca(physeq, factor = "Enterotype", color = "Diet", label = "Genus", ntaxa = 5)

## End(Not run)

TBrach/MicrobiomeX documentation built on May 14, 2019, 2:28 p.m.