tabulate_factors: Tabulate interaction between two factors in the sample_data...
In TBrach/MicrobiomeX: eXtended Functions for Microbiome Analysis and Visualization
Description
Usage
Arguments
Value
Examples
Description
Tabulate interaction between two factors in the sample_data of a phyloseq object
Usage
1
tabulate_factors(physeq, factor1, factor2)
Arguments
physeq
Phyloseq object
factor1
First factor
factor2
Second factor
Value
data frame containing table of two-factor interactions.
Examples
1
2
3
4
5
6
## Not run:
tab <- tabulate_factors(physeq, "Diet", "Enterotype")
colnames(tab) <- paste0("ET-", colnames(tab))
knitr::kable(tab, caption = "Distribution of enterotypes in the different Diet groups")
## End(Not run)
TBrach/MicrobiomeX documentation built on May 14, 2019, 2:28 p.m.
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Description Usage Arguments Value Examples
Description
Tabulate interaction between two factors in the sample_data of a phyloseq object
Usage
1 | tabulate_factors(physeq, factor1, factor2)
|
Arguments
physeq |
Phyloseq object |
factor1 |
First factor |
factor2 |
Second factor |
Value
data frame containing table of two-factor interactions.
Examples
1 2 3 4 5 6 | ## Not run:
tab <- tabulate_factors(physeq, "Diet", "Enterotype")
colnames(tab) <- paste0("ET-", colnames(tab))
knitr::kable(tab, caption = "Distribution of enterotypes in the different Diet groups")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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