format_hits_for_heatmap: Format significant hits results so that it can be shown as an...
In TBrach/MicrobiomeX: eXtended Functions for Microbiome Analysis and Visualization
Description
Usage
Arguments
Value
Examples
Description
Format significant hits results so that it can be shown as an annotation by pheatmap().
Usage
1
format_hits_for_heatmap(hits)
Arguments
hits
results object consisting the significant hits obtained from format_hits().
Value
data frame consisting the significant hits and their statistical significance as
a character vector - c(" NS", "*", "**", "***").
Examples
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## Not run:
x <- test_differential_prevalence(physeq, group = "Diet", block = "Enterotype")
y <- format_hits(x)
z <- format_hits_for_heatmap(y)
p <- draw_taxa_heatmap(physeq, taxa_data = z, group = "Diet", block = "Enterotype")
## End(Not run)
TBrach/MicrobiomeX documentation built on May 14, 2019, 2:28 p.m.
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Description Usage Arguments Value Examples
Description
Format significant hits results so that it can be shown as an annotation by pheatmap().
Usage
1 | format_hits_for_heatmap(hits)
|
Arguments
hits |
results object consisting the significant hits obtained from |
Value
data frame consisting the significant hits and their statistical significance as
a character vector - c(" NS", "*", "**", "***").
Examples
1 2 3 4 5 6 7 8 | ## Not run:
x <- test_differential_prevalence(physeq, group = "Diet", block = "Enterotype")
y <- format_hits(x)
z <- format_hits_for_heatmap(y)
p <- draw_taxa_heatmap(physeq, taxa_data = z, group = "Diet", block = "Enterotype")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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