Files in TGuillerme/Inapp
Inapplicable Discrete Characters Reconstruction

.gitignore
.travis.yml
Analysis/Data/Chains.bib
Analysis/Data/Counting/Baker2009.nex.tre.orig
Analysis/Data/Matrices/Asher2005.nex
Analysis/Data/Matrices/Baker2009.nex
Analysis/Data/Matrices/Bouchenak2010.nex
Analysis/Data/Matrices/Dikow2009.nex
Analysis/Data/Matrices/Geisler2001.nex
Analysis/Data/Matrices/Giles2015.nex
Analysis/Data/Matrices/Griswold1999.nex
Analysis/Data/Matrices/Liljeblad2008.nex
Analysis/Data/Matrices/Loconte1991.nex
Analysis/Data/Matrices/Longrich2010.nex
Analysis/Data/Matrices/Sharkey2011.nex
Analysis/Data/Matrices/Sundue2010.nex
Analysis/Data/Matrices/Wiens2010.nex
Analysis/Data/Matrices/Wilson2003.nex
Analysis/Data/Matrices/Wortley2006.nex
Analysis/Data/Matrices/Zanol2012.nex
Analysis/Data/Matrices/treebase-matrix_names.csv
Analysis/Data/PAWM
Analysis/Data/Trees/move.trees.sh
Analysis/Data/count.morphy.sh
Analysis/Data/set.job.paup.sh
Analysis/Data/solving.polytomies.sh
Analysis/Functions/count.morphy.sh
Analysis/Functions/plot.scores.R Analysis/Functions/read.tree.score.R
Analysis/Functions/set.job.paup.sh
Analysis/Functions/solving.polytomies.sh
Analysis/Functions/standardise.score.R Analysis/Functions/test.R Analysis/Pipeline_description.md Analysis/algorithm_effect.Rmd
Analysis/algorithm_effect.html
Analysis/algorithm_effect_old.Rmd
Analysis/algorithm_effect_old.html
Analysis/count_difference.tex
Analysis/pipeline.R
DESCRIPTION
NAMESPACE
R/Fitch.reconstruction.R R/Inapp-package.R R/NA.reconstruction.R R/NA.utilities.R R/apply.reconstruction.R R/output.results.R R/output.results_fun.R R/plot.algorithm.R R/runInapp.R README.md Writing/algorithm_description.pdf
Writing/algorithm_description.tex
codecov.yml
helpers.R man/Inapp-package.Rd man/apply.reconstruction.Rd man/first.downpass.Rd man/first.uppass.Rd man/fitch.downpass.Rd man/fitch.uppass.Rd man/make.states.matrix.Rd man/output.states.matrix.Rd man/plot.states.matrix.Rd man/print.states.matrix.Rd man/runInapp.Rd man/second.downpass.Rd man/second.uppass.Rd patch_notes.md server.R
support/Data/MartinTree.tre
support/Data/Matrix1.txt
support/Data/Matrix2.txt
support/Data/Matrix3.txt
support/Data/Matrix4.txt
support/Data/Matrix5.txt
support/Data/combined.nex
support/Data/matrix.nex
support/Data/tree.nex
support/Data/tree2.nex
support/Doc/plotting.inapplicable.Rmd
support/Doc/plotting.inapplicable.html
support/TestingAlgo.xlsx
support/Writing/Abstract.fls
support/Writing/Abstract.pdf
support/Writing/Abstract.tex
support/desiderata.md support/errors.md tests/testthat.R tests/testthat/test-Fitch.reconstruction.R tests/testthat/test-NA.counting.R tests/testthat/test-NA.reconstruction.R tests/testthat/test-NA.utilities.R tests/testthat/test-apply.reconstruction.R tests/testthat/test-output.results.R tests/testthat/test-plot.algorithm.R ui.R
TGuillerme/Inapp documentation built on Oct. 22, 2017, 4:19 p.m.