first.uppass: First uppass

In TGuillerme/Inapp: Reconstruction of Inapplicable Discrete Characters on Phylogenetic Trees

First uppass

Description

Applies a first uppass pass to a node

Usage

first.uppass(states_matrix)

Arguments

states_matrix

A list contains all the states and the activations

Author(s)

Thomas Guillerme

See Also

apply.reconstruction

Examples

## Create a states matrix for reconstruction
tree <- ape::read.tree(text = "((a,b),(c,d));")
NA_matrix <- make.states.matrix(tree, "01?-")

## Apply the first uppass
(NA_matrix <- first.uppass(first.downpass(NA_matrix)))

## Access the states
NA_matrix$Up1

TGuillerme/Inapp documentation built on Feb. 4, 2024, 7:26 a.m.