fitch.uppass: Fitch uppass
In TGuillerme/Inapp: Reconstruction of Inapplicable Discrete Characters on Phylogenetic Trees
View source: R/Fitch.reconstruction.R
fitch.uppass R Documentation
Fitch uppass
Description
Applies a Fitch up pass to a node
Usage
fitch.uppass(states_matrix)
Arguments
states_matrix
A list contains all the states and the activations
Author(s)
Thomas Guillerme
See Also
apply.reconstruction
Examples
## Create a states matrix for reconstruction
tree <- ape::read.tree(text = "((a,b),(c,d));")
matrix <- make.states.matrix(tree, "01?-", inapplicable = 1)
## Apply the fitch downpass
(matrix <- fitch.uppass(fitch.downpass(matrix)))
## Access the states
matrix$Up1
TGuillerme/Inapp documentation built on Feb. 4, 2024, 7:26 a.m.
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View source: R/Fitch.reconstruction.R
| fitch.uppass | R Documentation |
Fitch uppass
Description
Applies a Fitch up pass to a node
Usage
fitch.uppass(states_matrix)
Arguments
states_matrix |
A |
Author(s)
Thomas Guillerme
See Also
apply.reconstruction
Examples
## Create a states matrix for reconstruction
tree <- ape::read.tree(text = "((a,b),(c,d));")
matrix <- make.states.matrix(tree, "01?-", inapplicable = 1)
## Apply the fitch downpass
(matrix <- fitch.uppass(fitch.downpass(matrix)))
## Access the states
matrix$Up1
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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