SVGTree: SVG Tree

In TGuillerme/Inapp: Reconstruction of Inapplicable Discrete Characters on Phylogenetic Trees

SVG Tree

Description

Plots one of the character reconstructions embodied within an SVGCanvas object on a specified phylogenetic tree, returning SVG text that can be saved to file or included directly in an HTML document.

Usage

SVGTree(
  treeNo,
  canvas,
  char,
  stateLabels,
  treeNames,
  charIndex = 0,
  analysisLabels = character(0)
)

Arguments

treeNo	Integer specifying which of the trees on the SVGForest to plot
canvas	an object of class SVGForest.
char	Character string specifying character to optimise on the tree
stateLabels	Character vector specifying label for each applicable state of the character
treeNames	Character string naming the analysis used to generate each tree
charIndex	Character string specifying the number of the character, for inclusion under the SVG element's data-char attribute.
analysisLabels	Character vector specifying label for each analysis

Value

Character string describing an SVG object that depicts the tree, which can be written to file or included in markdown destined for HTML output.

Author(s)

Martin R. Smith

TGuillerme/Inapp documentation built on Feb. 4, 2024, 7:26 a.m.