second.downpass: Second downpass
In TGuillerme/Inapp: Reconstruction of Inapplicable Discrete Characters on Phylogenetic Trees
View source: R/NA.reconstruction.R
second.downpass R Documentation
Second downpass
Description
Applies a second down pass to a node
Usage
second.downpass(states_matrix)
Arguments
states_matrix
A list contains all the states and the activations
Author(s)
Thomas Guillerme
See Also
apply.reconstruction
Examples
## Create a states matrix for reconstruction
tree <- ape::read.tree(text = "((a,b),(c,d));")
NA_matrix <- make.states.matrix(tree, "01?-")
## Apply the second downpass
(NA_matrix <- second.downpass(first.uppass(first.downpass(NA_matrix))))
## Access the states
NA_matrix$Dp2
TGuillerme/Inapp documentation built on Feb. 4, 2024, 7:26 a.m.
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View source: R/NA.reconstruction.R
| second.downpass | R Documentation |
Second downpass
Description
Applies a second down pass to a node
Usage
second.downpass(states_matrix)
Arguments
states_matrix |
A |
Author(s)
Thomas Guillerme
See Also
apply.reconstruction
Examples
## Create a states matrix for reconstruction
tree <- ape::read.tree(text = "((a,b),(c,d));")
NA_matrix <- make.states.matrix(tree, "01?-")
## Apply the second downpass
(NA_matrix <- second.downpass(first.uppass(first.downpass(NA_matrix))))
## Access the states
NA_matrix$Dp2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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