Man pages for TJGorrie/bigmelon
Illumina methylation array analysis for large experiments
| app2gds | Append a MethyLumiSet object to a preexisting gds file |
| backupGdsn | Copy gds node to a backup folder within gds object |
| bigmelon-accessors | Bigmelon accessors |
| bigmelon-internal | Internal bigmelon functions |
| bigmelon-normalization | Bigmelon Quantile Normalization methods. |
| bigmelon-package | Write large-scale Illumina array datasets to CoreArray... |
| bigpepo | tea.gds - description and validation for gds objects |
| bumphunterGdsn | Bumphunter using bigmelon |
| cantaloupe | Small MethyLumi 450k data sets for testing |
| chainsaw | Chainsaw - modify gds file by subsetting all nodes |
| combogds | Combine two different gds objects together |
| dim.gds.class | dim.gds.class S3 method returning dimensions of data... |
| ecc | Cell Proportion Estimation using bigmelon |
| es2gds | Coersion method for MethyLumiSet, RGChannelSet or MethylSet... |
| finalreport2gds | Read finalreport files and convert to genomic data structure... |
| gds2mlumi | Convert Genomic Data Structure file to Methylumiset or... |
| GEOtoGDS | Download data from GEO and convert it into a gdsfmt object |
| getquantilesandranks | Compute the quantiles and ranks for a given gdsn.node |
| iadd | Add data from Illumina IDAT files to a gds file. |
| pfiltergds | Basic data filtering for Illumina methylation data in gds... |
| prcompgdsn | Principal Component Analysis for high-dimensional data |
| pwodgdsn | Probe-Wise Outlier Detection for DNA methylation data. |
| rankednorm | Dasen Quantile Normalization by storing ranks |
| redirect | Change the location of the paths for row and column names in... |
| wm-port | Functions imported from wateRmelon |
