bigmelon-package: Write large-scale Illumina array datasets to CoreArray...

In TJGorrie/bigmelon: Illumina methylation array analysis for large experiments

Write large-scale Illumina array datasets to CoreArray Genomic Data Structure (GDS) data files for efficient storage, access, and modification.

Description

Functions for storing Illumina array data as CoreArray Genomic Data Structure (GDS) data files (via the gdsfmt package), appending these files , and applying array normalization methods from the wateRmelon package.

Details

Package:	bigmelon
Type:	Package
Version:	1.13.8
Date:	2020-02-24
License:	GPL3

Author(s)

Tyler Gorrie-Stone Leonard C Schalkwyk, Ayden Saffari, Karim Malki. Who to contact: <[e-mail]>, <[e-mail]>

References

[1]Tyler J Gorrie-Stone, Melissa C Smart, Ayden Saffari, Karim Malki, Eilis Hannon, Joe Burrage, Jonathan Mill, Meena Kumari, Leonard C Schalkwyk: Bigmelon: tools for analysing large DNA methylation datasets, Bioinformatics, Volume 35, Issue 6, 15 March 2019, Pages 981-986. https://doi.org/10.1093/bioinformatics/bty713

[2]Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data. BMC genomics, 14(1), 293.

See Also

es2gds, dasen, wateRmelon, gdsfmt.

TJGorrie/bigmelon documentation built on Oct. 13, 2023, 9:51 p.m.