bigmelon-package: Write large-scale Illumina array datasets to CoreArray...
In TJGorrie/bigmelon: Illumina methylation array analysis for large experiments
bigmelon-package R Documentation
Write large-scale Illumina array datasets to CoreArray Genomic Data
Structure (GDS) data files for efficient storage, access, and modification.
Description
Functions for storing Illumina array data as CoreArray Genomic Data Structure
(GDS) data files (via the gdsfmt package), appending these files , and
applying array normalization methods from the wateRmelon package.
Details
Package: bigmelon
Type: Package
Version: 1.13.8
Date: 2020-02-24
License: GPL3
Author(s)
Tyler Gorrie-Stone Leonard C Schalkwyk, Ayden Saffari, Karim Malki.
Who to contact: <t.gorrie-stone@qmul.ac.uk>, <lschal@essex.ac.uk>
References
[1]Tyler J Gorrie-Stone, Melissa C Smart, Ayden Saffari, Karim Malki, Eilis Hannon, Joe Burrage, Jonathan Mill, Meena Kumari, Leonard C Schalkwyk:
Bigmelon: tools for analysing large DNA methylation datasets, Bioinformatics, Volume 35, Issue 6, 15 March 2019, Pages 981-986.
https://doi.org/10.1093/bioinformatics/bty713
[2]Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC:
A data-driven approach to preprocessing Illumina 450K methylation array data.
BMC genomics, 14(1), 293.
See Also
es2gds, dasen, wateRmelon,
gdsfmt.
TJGorrie/bigmelon documentation built on June 12, 2024, 6:19 p.m.
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| bigmelon-package | R Documentation |
Write large-scale Illumina array datasets to CoreArray Genomic Data Structure (GDS) data files for efficient storage, access, and modification.
Description
Functions for storing Illumina array data as CoreArray Genomic Data Structure (GDS) data files (via the gdsfmt package), appending these files , and applying array normalization methods from the wateRmelon package.
Details
| Package: | bigmelon |
| Type: | Package |
| Version: | 1.13.8 |
| Date: | 2020-02-24 |
| License: | GPL3 |
Author(s)
Tyler Gorrie-Stone Leonard C Schalkwyk, Ayden Saffari, Karim Malki. Who to contact: <t.gorrie-stone@qmul.ac.uk>, <lschal@essex.ac.uk>
References
[1]Tyler J Gorrie-Stone, Melissa C Smart, Ayden Saffari, Karim Malki, Eilis Hannon, Joe Burrage, Jonathan Mill, Meena Kumari, Leonard C Schalkwyk: Bigmelon: tools for analysing large DNA methylation datasets, Bioinformatics, Volume 35, Issue 6, 15 March 2019, Pages 981-986. https://doi.org/10.1093/bioinformatics/bty713
[2]Pidsley R, Wong CCY, Volta M, Lunnon K, Mill J, Schalkwyk LC: A data-driven approach to preprocessing Illumina 450K methylation array data. BMC genomics, 14(1), 293.
See Also
es2gds, dasen, wateRmelon,
gdsfmt.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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