gds2mlumi: Convert Genomic Data Structure file to Methylumiset or...
In TJGorrie/bigmelon: Illumina methylation array analysis for large experiments
gds2mlumi R Documentation
Convert Genomic Data Structure file to Methylumiset or Methylset object.
Description
Convert a Genomic Data Structure object back into a methylumi object,
with subsetting features.
Usage
gds2mlumi(gds, i, j)
gds2mset(gds, i, j, anno)
Arguments
gds
a gds object
i
Index of rows
j
Index of Columns
anno
If NULL, function will attempt to guess the annotation to be used.
Otherwise can be specified with either "27k", "450k", "epic" or "unknown".
Value
A methylumi object
Author(s)
Tyler Gorrie-Stone
Who to contact: <t.gorrie-stone@qmul.ac.uk>
Examples
data(melon)
e <- es2gds(melon, "melon.gds")
gds2mlumi(e)
closefn.gds(e)
unlink("melon.gds")
TJGorrie/bigmelon documentation built on June 12, 2024, 6:19 p.m.
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| gds2mlumi | R Documentation |
Convert Genomic Data Structure file to Methylumiset or Methylset object.
Description
Convert a Genomic Data Structure object back into a methylumi object, with subsetting features.
Usage
gds2mlumi(gds, i, j)
gds2mset(gds, i, j, anno)
Arguments
gds |
a gds object |
i |
Index of rows |
j |
Index of Columns |
anno |
If NULL, function will attempt to guess the annotation to be used. Otherwise can be specified with either "27k", "450k", "epic" or "unknown". |
Value
A methylumi object
Author(s)
Tyler Gorrie-Stone Who to contact: <t.gorrie-stone@qmul.ac.uk>
Examples
data(melon)
e <- es2gds(melon, "melon.gds")
gds2mlumi(e)
closefn.gds(e)
unlink("melon.gds")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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