es2gds: Coersion method for MethyLumiSet, RGChannelSet or MethylSet...
In TJGorrie/bigmelon: Illumina methylation array analysis for large experiments
es2gds R Documentation
Coersion method for MethyLumiSet, RGChannelSet or MethylSet to CoreArray
Genomic Data Structure (GDS) data file
Description
The es2gds function takes a MethyLumiSet, RGChannelSet or MethylSet data object
and converts it into a CoreArray Genomic Data Structure (GDS) data file
(via the gdsfmt package), returning this as a gds.class object for use
with bigmelon.
Usage
es2gds(m, file, qc = TRUE)
Arguments
m
A MethyLumiSet, RGChannelSet or MethylSet object
file
A character string specifying the name of the .gds file to write to.
qc
When set to true (default), data from control probes included.
Value
A gds.class object, which points to the newly created .gds file.
Author(s)
Leonard C Schalkwyk, Ayden Saffari, Tyler Gorrie-Stone
Who to contact: <t.gorrie-stone@qmul.ac.uk>
See Also
app2gds, iadd.
Examples
#load example dataset
data(melon)
#convert to gds
e <- es2gds(melon,'melon.gds')
closefn.gds(e)
unlink('melon.gds')
TJGorrie/bigmelon documentation built on June 12, 2024, 6:19 p.m.
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| es2gds | R Documentation |
Coersion method for MethyLumiSet, RGChannelSet or MethylSet to CoreArray Genomic Data Structure (GDS) data file
Description
The es2gds function takes a MethyLumiSet, RGChannelSet or MethylSet data object and converts it into a CoreArray Genomic Data Structure (GDS) data file (via the gdsfmt package), returning this as a gds.class object for use with bigmelon.
Usage
es2gds(m, file, qc = TRUE)
Arguments
m |
A MethyLumiSet, RGChannelSet or MethylSet object |
file |
A character string specifying the name of the .gds file to write to. |
qc |
When set to true (default), data from control probes included. |
Value
A gds.class object, which points to the newly created .gds file.
Author(s)
Leonard C Schalkwyk, Ayden Saffari, Tyler Gorrie-Stone Who to contact: <t.gorrie-stone@qmul.ac.uk>
See Also
app2gds, iadd.
Examples
#load example dataset
data(melon)
#convert to gds
e <- es2gds(melon,'melon.gds')
closefn.gds(e)
unlink('melon.gds')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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