API for TJGorrie/bigmelon
Illumina methylation array analysis for large experiments
| Global functions | |
|---|---|
| '[.gds.class' | Man page |
| '[.gdsn.class' | Man page |
| .getEstimate2 | Man page Source code |
| .onLoad | Source code |
| .sortvector | Man page Source code |
| QCmethylated | Man page |
| QCmethylated,gds.class-method | Man page |
| QCrownames | Man page |
| QCrownames,gds.class-method | Man page |
| QCunmethylated | Man page |
| QCunmethylated,gds.class-method | Man page |
| [.gds.class | Man page |
| [.gdsn.class | Man page |
| app2gds | Man page Source code |
| backup.gdsn | Man page Source code |
| betaqn,gds.class-method | Man page |
| betas,gds.class-method | Man page |
| bigmelon | Man page |
| bigmelon-accessors | Man page |
| bigmelon-internal | Man page |
| bigmelon-package | Man page |
| bmrownames | Man page |
| bmrownames,gds.class-method | Man page |
| bumphunterEngine.gdsn | Man page Source code |
| cantaloupe | Man page |
| chainsaw | Man page Source code |
| colnames,gds.class-method | Man page |
| colnames,gdsn.class-method | Man page |
| combo.gds | Man page Source code |
| computebeta.gds | Man page Source code |
| danen,gds.class-method | Man page |
| danen.gds | Man page Source code |
| danes,gds.class-method | Man page |
| danes.gds | Man page Source code |
| danet,gds.class-method | Man page |
| danet.gds | Man page Source code |
| dasen,gds.class-method | Man page |
| dasen.gds | Man page Source code |
| dasen2 | Man page |
| dasenrank | Man page Source code |
| daten1,gds.class-method | Man page |
| daten1.gds | Man page Source code |
| daten2,gds.class-method | Man page |
| daten2.gds | Man page Source code |
| db.gdsn | Man page Source code |
| dfsfit.gdsn | Man page Source code |
| dfsfit.gdsn.class.1 | Man page |
| dim.gds.class | Man page |
| dmrse,gds.class-method | Man page |
| dmrse,gdsn.class-method | Man page |
| dmrse_col,gds.class-method | Man page |
| dmrse_col,gdsn.class-method | Man page |
| dmrse_row,gds.class-method | Man page |
| dmrse_row,gdsn.class-method | Man page |
| es2gds | Man page Source code |
| estimateCellCounts.gds | Man page Source code |
| exprs,gds.class-method | Man page |
| fData,gds.class-method | Man page |
| finalreport2gds | Man page Source code |
| findgdsobj | Man page Source code |
| fot | Man page |
| fot,gds.class-method | Man page |
| gds2mlumi | Man page Source code |
| gds2mset | Man page Source code |
| genki,gds.class-method | Man page |
| genki,gdsn.class-method | Man page |
| geotogds | Man page Source code |
| getHistory,gds.class-method | Man page |
| getTrait | Man page Source code |
| getpheno | Man page Source code |
| getquantiles | Man page Source code |
| getquantilesandranks | Man page Source code |
| handle | Man page Source code |
| honeydew | Man page |
| iadd | Man page |
| iadd2 | Man page Source code |
| idats2gds | Man page Source code |
| methylated,gds.class-method | Man page |
| nanes,gds.class-method | Man page |
| nanes.gds | Man page Source code |
| nanet,gds.class-method | Man page |
| nanet.gds | Man page Source code |
| nasen,gds.class-method | Man page |
| nasen.gds | Man page Source code |
| naten,gds.class-method | Man page |
| naten.gds | Man page Source code |
| newgds | Man page Source code |
| normalizeQuantiles.gdsn.class | Man page |
| pData,gds.class-method | Man page |
| pfilter,gds.class | Man page |
| pfilter,gds.class-method | Man page |
| pfilter.gds | Man page Source code |
| prcomp, gds.class | Man page |
| prcomp, gds.class-method | Man page |
| prcomp.gds | Man page |
| prcomp.gds.class | Man page Source code |
| predictSex | Man page |
| predictSex,gds.class-method | Man page |
| predictSex,gdsn.class-method | Man page |
| pvals,gds.class-method | Man page |
| pwod, gds.class | Man page |
| pwod, gdsn.class | Man page |
| pwod.gdsn | Man page Source code |
| qn.gdsn | Man page Source code |
| qual,gdsn.class,gdsn.class-method | Man page |
| redirect.gds | Man page Source code |
| rownames,gds.class-method | Man page |
| rownames,gdsn.class-method | Man page |
| seabi,gds.class-method | Man page |
| subSet | Man page |
| subSet,gds.class-method | Man page |
| unmethylated,gds.class-method | Man page |
| wm-port | Man page |
| zot | Man page |
