evaluate_tf: Get across TF This function calculates coverages for TFBS of...

In TearsWillFall/ULPwgs: An implementation of a wrapper for estimating tumor fraction in ultra-low-pass whole genome sequencing (ULP-WGS) for cell-free DNA in GNU/Unix based systems

Get across TF This function calculates coverages for TFBS of a single TF

Description

Get across TF This function calculates coverages for TFBS of a single TF

Usage

evaluate_tf(
  gpos = NULL,
  bam = NULL,
  region = 1000,
  ntfbs = NULL,
  sep = "\t",
  header = TRUE,
  ...
)

Arguments

gpos	File with genomic position or data.frame
bam	Path to BAM file.
region	Number of bases around the genomic position
ntfbs	Number of TFBS to use. TFBS relevance based on peak.count column. Default NULL.
sep	Separator to read genomic position file.
header	Header in GPOS file. Defaults TRUE

TearsWillFall/ULPwgs documentation built on April 18, 2024, 3:45 p.m.