read_bed: Read a BED file This function reads a BED file and stores it...

In TearsWillFall/ULPwgs: An implementation of a wrapper for estimating tumor fraction in ultra-low-pass whole genome sequencing (ULP-WGS) for cell-free DNA in GNU/Unix based systems

Read a BED file This function reads a BED file and stores it in a list format. Assumes 0 based BED file

Description

bed structure: time: System time at read time bed_origin: Path to BED origin file body: BED body

Usage

read_bed(
  bed = NULL,
  sep = "\t",
  header = TRUE,
  rename = TRUE,
  sort = FALSE,
  threads = 1
)

Arguments

bed	Path to the BED file
sep	File separator
header	File contains header. Default TRUE
rename	Rename BED column names to standard BED file format.

Value

A list with time, body,bed_origin information

TearsWillFall/ULPwgs documentation built on April 18, 2024, 3:45 p.m.