read_bed_circlemap: Read Circle-Map circDNA BED file output
In TearsWillFall/ULPwgs: An implementation of a wrapper for estimating tumor fraction in ultra-low-pass whole genome sequencing (ULP-WGS) for cell-free DNA in GNU/Unix based systems
read_bed_circlemap R Documentation
Read Circle-Map circDNA BED file output
Description
This function reads the circle-map circDNA output file
Usage
read_bed_circlemap(bed = NULL, type = "repeat", id = NULL, sep = "\t")
Arguments
bed
REQUIRED Path to bed file.
type
REQUIRED circleMap output type. Default "repeat".
id
OPTIONAL Sample identifier. If not given the name of the first tumour sample of the samples will be used.
Details
//TODO validate co-joint calling mode
For more information read:
https://github.com/iprada/Circle-Map
TearsWillFall/ULPwgs documentation built on April 18, 2024, 3:45 p.m.
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| read_bed_circlemap | R Documentation |
Read Circle-Map circDNA BED file output
Description
This function reads the circle-map circDNA output file
Usage
read_bed_circlemap(bed = NULL, type = "repeat", id = NULL, sep = "\t")
Arguments
bed |
REQUIRED Path to bed file. |
type |
REQUIRED circleMap output type. Default "repeat". |
id |
OPTIONAL Sample identifier. If not given the name of the first tumour sample of the samples will be used. |
Details
//TODO validate co-joint calling mode
For more information read: https://github.com/iprada/Circle-Map
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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