read_fasta: Read reference genome fasta file
In TearsWillFall/ULPwgs: An implementation of a wrapper for estimating tumor fraction in ultra-low-pass whole genome sequencing (ULP-WGS) for cell-free DNA in GNU/Unix based systems
read_fasta R Documentation
Read reference genome fasta file
Description
Read reference genome fasta file
Usage
read_fasta(fasta = NULL, fai = NULL, sort = TRUE, threads = 1)
Arguments
fasta
PATH to FASTA file
fai
PATH to FAI file. If not given assumes same directory as fasta file
sort
Sort genomic positions alphanumerically. Default TRUE
threads
Number of threads to use. Default 1
Details
fasta object structure:
time: System time at read time
fasta_origin: PATH to fasta origin file
body: Fasta body
Value
A fasta_object
TearsWillFall/ULPwgs documentation built on April 18, 2024, 3:45 p.m.
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| read_fasta | R Documentation |
Read reference genome fasta file
Description
Read reference genome fasta file
Usage
read_fasta(fasta = NULL, fai = NULL, sort = TRUE, threads = 1)
Arguments
fasta |
PATH to FASTA file |
fai |
PATH to FAI file. If not given assumes same directory as fasta file |
sort |
Sort genomic positions alphanumerically. Default TRUE |
threads |
Number of threads to use. Default 1 |
Details
fasta object structure: time: System time at read time fasta_origin: PATH to fasta origin file body: Fasta body
Value
A fasta_object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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