read_gpos: Read file with Genomic Positions
In TearsWillFall/ULPwgs: An implementation of a wrapper for estimating tumor fraction in ultra-low-pass whole genome sequencing (ULP-WGS) for cell-free DNA in GNU/Unix based systems
read_gpos R Documentation
Read file with Genomic Positions
Description
Valid positional formats include data.frame with chrom and position columns,
as well as VCF and BED files.
Usage
read_gpos(
gpos = NULL,
sort = TRUE,
header = TRUE,
sep = "\t",
rename = TRUE,
threads = 1
)
Arguments
gpos
Data.frame or Path to BED/VCF style files
sort
Sort genomic positions alphanumerically. Default TRUE
Details
Gpos structure:
time: System time at read time
origin_file_type: data.frame/vcf/bed
gpos_origin: Path to gpos origin file
body: Gpos body
Value
A data.frame with genomic position information
TearsWillFall/ULPwgs documentation built on April 18, 2024, 3:45 p.m.
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| read_gpos | R Documentation |
Read file with Genomic Positions
Description
Valid positional formats include data.frame with chrom and position columns, as well as VCF and BED files.
Usage
read_gpos(
gpos = NULL,
sort = TRUE,
header = TRUE,
sep = "\t",
rename = TRUE,
threads = 1
)
Arguments
gpos |
Data.frame or Path to BED/VCF style files |
sort |
Sort genomic positions alphanumerically. Default TRUE |
Details
Gpos structure: time: System time at read time origin_file_type: data.frame/vcf/bed gpos_origin: Path to gpos origin file body: Gpos body
Value
A data.frame with genomic position information
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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