run_meddic2: Preprocess sequencing data
In TearsWillFall/ULPwgs: An implementation of a wrapper for estimating tumor fraction in ultra-low-pass whole genome sequencing (ULP-WGS) for cell-free DNA in GNU/Unix based systems
run_meddic2 R Documentation
Preprocess sequencing data
Description
Preprocess sequencing data
Usage
run_meddic2(
cn = NULL,
env_medicc2 = build_default_python_enviroment_list()$env_medicc2,
...
)
Arguments
tumour
Path to a single or multiple BAM files
normal
Path to a normal matched BAM file
chromosomes
Select chromosomes to analyze. Default NULL
env_hatchet
Hatchet conda enviroment
config
Hatchet configuration for each step
TearsWillFall/ULPwgs documentation built on April 18, 2024, 3:45 p.m.
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| run_meddic2 | R Documentation |
Preprocess sequencing data
Description
Preprocess sequencing data
Usage
run_meddic2(
cn = NULL,
env_medicc2 = build_default_python_enviroment_list()$env_medicc2,
...
)
Arguments
tumour |
Path to a single or multiple BAM files |
normal |
Path to a normal matched BAM file |
chromosomes |
Select chromosomes to analyze. Default NULL |
env_hatchet |
Hatchet conda enviroment |
config |
Hatchet configuration for each step |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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