plot_marker_level_heatmap: plot_marker_level_heatmap

In TrigosTeam/SPIAT: Spatial Image Analysis of Tissues

plot_marker_level_heatmap

Description

Blurs the image by splitting the images into small squares. The marker levels are then averaged within each square. All cells are considered, regardless of phenotype status.

Usage

plot_marker_level_heatmap(spe_object, num_splits, marker)

Arguments

spe_object	SpatialExperiment object in the form of the output of format_image_to_spe.
num_splits	Integer specifying the blurring level (number of splits) for the image. Higher numbers result in higher resolution.
marker	String. Marker to plot.

Value

A plot is returned

Examples

plot_marker_level_heatmap(SPIAT::simulated_image, num_splits = 100, "Tumour_marker")

TrigosTeam/SPIAT documentation built on Aug. 22, 2024, 7:50 p.m.