ENhJAM.SimulationSet: Simulation data for EN-hJAM

In USCbiostats/hJAM: Hierarchical Joint Analysis of Marginal Summary Statistics

Simulation data for EN-hJAM

Description

Simulation data for EN-hJAM

Format

The ENhJAM.SimulationSet is a set of simulation data sets for the example of elastic net hJAM

Simulation.Amatrix

The conditional \hat{A} matrix with 118 metabolites and 144 SNPs, which was composed by SuSiE JAM and the marginal \hat{A} matrix.

Simulation.Geno

The reference genotype data for the 144 SNPs from the European-ancestry population in 1000 Genome Project (Consortium, 2015).

Simulation.betas.gwas

The b vector. The association estimates between selected SNPs and the risk of prostate cancer from (Schumacher et al., 2018)

Simulation.betas.se.gwas

The se(b) vector from (Schumacher et al., 2018)

Simulation.maf.gwas

The vector of the effect allele frequency of the SNPs from (Schumacher et al., 2018)

USCbiostats/hJAM documentation built on Jan. 26, 2024, 5:27 p.m.