SNPs_scatter_plot: Scatter plot for SNPs vs. one intermediate in the analysis
In USCbiostats/hJAM: Hierarchical Joint Analysis of Marginal Summary Statistics
SNPs_scatter_plot R Documentation
Scatter plot for SNPs vs. one intermediate in the analysis
Description
To generate the scatter plot of the SNPs vs. one intermediate that the user use in the analysis
Usage
SNPs_scatter_plot(alphas, betas.Gy, X.label = NULL)
Arguments
alphas
The effects of SNPs on the intermediate (i.e. exposure/risk factor) (Gx).
betas.Gy
The betas in the paper: the marginal effects of SNPs on the phenotype (Gy)
X.label
The label of the intermediate (i.e. exposure/risk factor). Default is NULL.
Value
A set of scatter plots with x-axis being the conditional \alpha estimates for each
intermediate and y-axis being the \beta estimates.
Author(s)
Lai Jiang
Examples
data(MI)
SNPs_scatter_plot(alphas = MI.Amatrix[, 1], betas.Gy = MI.betas.gwas, X.label = "BMI")
USCbiostats/hJAM documentation built on Jan. 26, 2024, 5:27 p.m.
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| SNPs_scatter_plot | R Documentation |
Scatter plot for SNPs vs. one intermediate in the analysis
Description
To generate the scatter plot of the SNPs vs. one intermediate that the user use in the analysis
Usage
SNPs_scatter_plot(alphas, betas.Gy, X.label = NULL)
Arguments
alphas |
The effects of SNPs on the intermediate (i.e. exposure/risk factor) (Gx). |
betas.Gy |
The betas in the paper: the marginal effects of SNPs on the phenotype (Gy) |
X.label |
The label of the intermediate (i.e. exposure/risk factor). Default is NULL. |
Value
A set of scatter plots with x-axis being the conditional \alpha estimates for each
intermediate and y-axis being the \beta estimates.
Author(s)
Lai Jiang
Examples
data(MI)
SNPs_scatter_plot(alphas = MI.Amatrix[, 1], betas.Gy = MI.betas.gwas, X.label = "BMI")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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