View source: R/mJAM_helper_chrX.R View source: R/mJAM_helper.R
LogisticToLinearEffects | R Documentation |
Adopted from R2BGLiMS::JAM_LogisticToLinearEffects. Reference: Benner 2015, FINEMAP
Adopted from R2BGLiMS::JAM_LogisticToLinearEffects. Reference: Benner 2015, FINEMAP
LogisticToLinearEffects(
log.ors = NULL,
log.or.ses = NULL,
snp.genotype.sds = NULL,
mafs = NULL,
n = NULL,
p.cases = NULL
)
LogisticToLinearEffects(
log.ors = NULL,
log.or.ses = NULL,
snp.genotype.sds = NULL,
mafs = NULL,
n = NULL,
p.cases = NULL
)
log.ors |
A vector of log odds ratios |
log.or.ses |
A vector of the standard errors of the log ORs |
snp.genotype.sds |
A vector of standard deviations of genotypes (optional if 'mafs' is provided) |
mafs |
A vector of effective allele frequencies (optional if 'snp.genotype.sds' is provided) |
n |
Sample size in the GWAS where we obtained 'log.ors' |
p.cases |
A numeric value of the proportion of cases in the GWAS. |
Transformed linear effect estimates, and transformed standards errors of linear effects.
Transformed linear effect estimates, and transformed standards errors of linear effects.
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