mJAM_SuSiE_get_cs: Get and tidy SuSiE credible sets

In USCbiostats/hJAM: Hierarchical Joint Analysis of Marginal Summary Statistics

Get and tidy SuSiE credible sets

Description

Get and tidy SuSiE credible sets

Usage

mJAM_SuSiE_get_cs(mjam_susie_res, coverage = 0.95)

Arguments

mjam_susie_res	The mJAM-SuSiE result returned from 'mJAM_SuSiE()'
coverage	A number between 0 and 1 specifying the “coverage” of the estimated confidence sets.

Value

A table summary of SuSiE credible sets with the following columns:

#'

index

The label for a distinct credible set.

coverage

The empirical coverage of this credible set.

CS_size

The number of SNPs in total in corresponding credible set.

index_SNP_id

The name of the index SNP (SNP with highest posterior probability) in corresponding credible set.

CS_SNP_id

The names of individual SNPs selected in this credible set.

Author(s)

Jiayi Shen

USCbiostats/hJAM documentation built on Jan. 26, 2024, 5:27 p.m.