write_pli | R Documentation |
Write pli files used by SIFTER
write_pli(
family_id,
protein_name,
protein_number,
go_number,
moc = "EXP",
file = ""
)
family_id |
Character scalar. Name of the family |
protein_name, protein_number, go_number, moc |
Vectors of the same length |
file |
Character scalar passed to cat. |
A string with the XML file.
set.seed(882)
atree <- raphylo(5)
write_pli(
family_id = "a family",
protein_name = atree$tree$tip.label,
protein_number = 1:Ntip(atree),
go_number = "GO:123123123123"
)
# Possible outcome:
#<?xml version="1.0"?>
#<Family>
# <FamilyID>a family</FamilyID>
# <Protein>
# <ProteinName>1</ProteinName>
# <ProteinNumber>1</ProteinNumber>
# <GONumber>[GO:123123123123]</GONumber>
# <MOC>[EXP]</MOC>
# </Protein>
# <Protein>
# <ProteinName>2</ProteinName>
# <ProteinNumber>2</ProteinNumber>
# <GONumber>[GO:123123123123]</GONumber>
# <MOC>[EXP]</MOC>
# </Protein>
# <Protein>
# <ProteinName>3</ProteinName>
# <ProteinNumber>3</ProteinNumber>
# <GONumber>[GO:123123123123]</GONumber>
# <MOC>[EXP]</MOC>
# </Protein>
# <Protein>
# <ProteinName>4</ProteinName>
# <ProteinNumber>4</ProteinNumber>
# <GONumber>[GO:123123123123]</GONumber>
# <MOC>[EXP]</MOC>
# </Protein>
# <Protein>
# <ProteinName>5</ProteinName>
# <ProteinNumber>5</ProteinNumber>
# <GONumber>[GO:123123123123]</GONumber>
# <MOC>[EXP]</MOC>
# </Protein>
#</Family>
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