API for USCbiostats/phylogenetic
Statistical Inference of Annotated Phylogenetic Trees

Global functions
LogLike Man page Source code
PANTHER Man page
PANTHERDB Man page
add Source code
aphylo Man page
aphylo-class Man page
aphylo-methods Man page
aphylo-package Man page
aphylo_estimates-class Man page
aphylo_mcmc Man page Source code
aphylo_mle Man page Source code
approx_geodesic Man page Source code
as.phylo Man page
as.phylo.aphylo Man page Source code
as.phylo.matrix Man page Source code
as_aphylo Source code
check_annotations Source code
coef.aphylo_estimates Man page Source code
fakeexperiment Man page
faketree Man page
fast_table Source code
fast_table_using_labels Source code
list_offspring Man page Source code Source code
list_offspring.aphylo Man page Source code
list_offspring.phylo Man page Source code
map_ids_to_positions.aphylo_estimates Source code
new_aphylo Man page Source code
new_aphylo_estimates Source code
new_phylo Source code
obj_fun Source code
obj_fun_priors Source code
ogLike Source code
panther-tree Man page
plot-prediction Man page
plot.aphylo Man page Source code
plot.aphylo_estimates Man page Source code
plot.aphylo_prediction_score Man page Source code
plot_LogLike Man page Source code
plot_LogLike.aphylo_estimates Man page Source code
plot_LogLike.default Man page Source code
posterior-probabilities Man page
posterior_prob Source code
predict.aphylo_estimates Man page Source code
predict_brute_force Man page Source code
predict_pre_order Man page Source code
predict_random Source code
prediction_score Man page Source code
prediction_score_rand Source code
print.aphylo Man page Source code
print.aphylo_estimates Man page Source code
print.aphylo_prediction_score Man page Source code
prob_mat Source code
probabilities Source code
rdrop_annotations Man page Source code
read.panther Man page
read_panther Man page Source code
reduce_pseq Source code
release_questions Source code
root_node_prob Source code
set.default.plot.phylo.params Source code
sim_annotated_tree Man page Source code
sim_fun_on_tree Man page Source code Source code
sim_tree Man page Source code Source code
states Man page Source code
stop_ifuninformative Source code
summary.aphylo Man page Source code
try_solve Source code
vcov.aphylo_estimates Man page Source code
USCbiostats/phylogenetic documentation built on May 4, 2018, 2:27 p.m.