USGS-R/streamMetabolizer: Models for Estimating Aquatic Photosynthesis and Respiration

streamMetabolizer uses inverse modeling to estimate aquatic photosynthesis and respiration (collectively, metabolism) from time series data on dissolved oxygen, water temperature, depth, and light. The package assists with data preparation, handles data gaps during modeling, and provides tabular and graphical reports of model outputs. Several time-honored methods are implemented along with many promising new variants that produce more accurate and precise metabolism estimates.

Getting started

Package details

AuthorAlison P. Appling, Robert O. Hall, Maite Arroita, and Charles B. Yackulic
MaintainerAlison Appling <[email protected]>
Licensefile LICENSE
Version0.11.0
URL https://github.com/USGS-R/streamMetabolizer
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("USGS-R/streamMetabolizer")
USGS-R/streamMetabolizer documentation built on Oct. 21, 2018, 12:09 p.m.