bayes_allply: Make daily metabolism estimates from input parameters using a...

In USGS-R/streamMetabolizer: Models for Estimating Aquatic Photosynthesis and Respiration

Make daily metabolism estimates from input parameters using a hierarchical approach.

Description

Called from metab_bayes().

Usage

bayes_allply(data_all, data_daily_all, removed, specs)

Arguments

data_all	data.frame of the form mm_data(solar.time, DO.obs, DO.sat, depth, temp.water, light) and containing data for just one estimation-day (this may be >24 hours but only yields estimates for one 24-hour period)
data_daily_all	data.frame of daily priors, if appropriate to the given model_path
removed	data.frame of dates that were removed and why
specs	a list of model specifications and parameters for a model. Although this may be specified manually (it's just a list), it is easier and safer to use specs to generate the list, because the set of required parameters and their defaults depends on the model given in the model_name argument to specs. The help file for specs lists the necessary parameters, describes them in detail, and gives default values.

Value

data.frame of estimates and MCMC model diagnostics

USGS-R/streamMetabolizer documentation built on Aug. 15, 2023, 7:50 a.m.