get_mcmc: Extract any MCMC model objects that were stored with the...

In USGS-R/streamMetabolizer: Models for Estimating Aquatic Photosynthesis and Respiration

Extract any MCMC model objects that were stored with the model

Description

A function specific to metab_bayes models. Returns an MCMC object of class stanfit (rstan::stanfit), which is saved in the metab_model by default because you should almost always inspect it; see keep_mcmcs argument to specs() for options for saving space. The rstan methods for rstan::stanfit objects include summary(), get_stancode(), stan_dens(), stan_diag(), and many more. See ?'rstan-plotting-functions', rstan::stanfit and the rstan manual.

Usage

get_mcmc(metab_model)

## S3 method for class 'metab_bayes'
get_mcmc(metab_model)

Arguments

metab_model

A Bayesian metabolism model (metab_bayes) from which to return the MCMC model objects

Value

The MCMC model objects

Methods (by class)

• metab_bayes: Get the Bayesian MCMC model object

USGS-R/streamMetabolizer documentation built on Aug. 15, 2023, 7:50 a.m.