| AAcoor2NAcoor | AAcoor2NAcoor |
| AAcoor2NAcoor_df | AAcoor2NAcoor_df |
| AAcoor2NAcoor_dFAST | AAcoor2NAcoor_dFAST |
| AllFalse | AllFalse |
| AllTrue | AllTrue |
| AnyFalse | AnyFalse |
| as.char | as.char |
| as.num | as.num |
| CalcPcoverage | CalcPcoverage |
| CalcQcoverage | CalcQcoverage |
| Change2Date | Change2Date |
| ClearFunct | ClearFunct |
| ClearTmps | ClearTmps |
| CompareDFDT | CompareDFDT |
| CreateCSVFromGBFF | CreateCSVFromGBFF |
| DF2XString | DF2XString |
| dropcols | 'dropcols' |
| DropNode | DropNode |
| DropNodeKids | DropNodeKids |
| droprows | 'droprows' |
| Even | Even |
| ExtractFastaSeqsFromGBFF | ExtractFastaSeqsFromGBFF |
| fread0 | fread0 |
| GenerateSeqDescriptors | GenerateSeqDescriptors |
| GenericHitsParser | GenericHitsParser |
| GenericRunner | GenericRunner |
| GenericRunnerInOut | GenericRunnerInOut |
| GetKids | GetKids |
| GetNCBITaxonomyChildNodes | GetNCBITaxonomyChildNodes |
| GetParents | GetParents |
| GetUnwantedKids | GetUnwantedKids |
| Grange2gbRecord | Grange2gbRecord |
| HeaderBreaker | HeaderBreaker |
| HeaderBreakerCb | HeaderBreakerCb |
| InstallDependenciesBC | InstallDependenciesBC |
| InstallDependenciesCran | InstallDependenciesCran |
| InstallDependenciesGH | InstallDependenciesGH |
| isTip | isTip |
| Kalign3 | Kalign3 |
| len | len |
| MergeXtYf | MergeXtYf |
| MMseqsClstsReader | MMseqsClstsReader |
| NID2NLabel | NID2NLabel |
| NLabel2NID | NLabel2NID |
| Odd | Odd |
| p0 | p0 |
| pad | pad |
| PopForna | PopForna |
| Prodigal_AA2NA | Prodigal_AA2NA |
| QuickLoad | QuickLoad |
| QuickSave | QuickSave |
| QuickTreePDF | QuickTreePDF |
| QuickTreePDF2 | QuickTreePDF2 |
| ReadABC | ReadABC |
| ReadABC2 | ReadABC2 |
| ReadDBN | ReadDBN |
| ReadGFF | ReadGFF |
| ReadMcl | ReadMcl |
| ReadXlsx | ReadXlsx |
| RemoveEmptyStrCols | RemoveEmptyStrCols |
| RemoveEmptyStrRows | RemoveEmptyStrRows |
| RemoveNACols | RemoveNACols |
| RemoveNARows | RemoveNARows |
| RemovesSparseols | RemovesSparseols |
| Rename1Col | Rename1Col |
| RepositionClade | RepositionClade |
| ScreenLastz | ScreenLastz |
| SharedCols | SharedCols |
| show_me_the_contig | show_me_the_contig |
| SplitTree2MonoPhyloByTips | SplitTree2MonoPhyloByTips |
| swap | swap |
| TabUnroll | TabUnroll |
| Tree2Edgetbl | Tree2Edgetbl |
| Trim2Core2 | Trim2Core2 |
| Trimifo | Trimifo |
| Trimito | Trimito |
| UnSharedCols | UnSharedCols |
| wana | wana |
| wh | wh |
| whd | whd |
| which.duplicated | which.duplicated |
| which.na | which.na |
| which.Not.na | which.Not.na |
| wna | wna |
| WriteWolfTbl | WriteWolfTbl |
| WriteXlsx | WriteXlsx |
| XSDNARedunFilter | XSDNARedunFilter |
| XString2DF | XString2DF |
| XString2KmerDT | XString2KmerDT |
| zstdR | zstdR |
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