CalcPcoverage: CalcPcoverage
In UriNeri/NeriMisc: Neri's Miscellaneous helper functions
CalcPcoverage R Documentation
CalcPcoverage
Description
Calculate profile (subject) coverage, based on alignment coordinates and profile length.
Usage
CalcPcoverage(hit_df)
Arguments
hit_df
Input table (data.frame). Usually tabular search results of profile search e.g. hmmsearch
Value
data.frame
See Also
Other Table_functions:
CalcQcoverage(),
CompareDFDT(),
HeaderBreakerCb(),
HeaderBreaker(),
MergeXtYf(),
ReadXlsx(),
RemoveEmptyStrCols(),
RemoveEmptyStrRows(),
RemoveNACols(),
RemovesSparseols(),
Rename1Col(),
SharedCols(),
Trimifo(),
Trimito(),
UnSharedCols(),
WriteWolfTbl(),
WriteXlsx(),
dropcols(),
droprows()
Examples
CalcPcoverage
UriNeri/NeriMisc documentation built on Aug. 13, 2022, 4:37 p.m.
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| CalcPcoverage | R Documentation |
CalcPcoverage
Description
Calculate profile (subject) coverage, based on alignment coordinates and profile length.
Usage
CalcPcoverage(hit_df)
Arguments
hit_df |
Input table (data.frame). Usually tabular search results of profile search e.g. hmmsearch |
Value
data.frame
See Also
Other Table_functions:
CalcQcoverage(),
CompareDFDT(),
HeaderBreakerCb(),
HeaderBreaker(),
MergeXtYf(),
ReadXlsx(),
RemoveEmptyStrCols(),
RemoveEmptyStrRows(),
RemoveNACols(),
RemovesSparseols(),
Rename1Col(),
SharedCols(),
Trimifo(),
Trimito(),
UnSharedCols(),
WriteWolfTbl(),
WriteXlsx(),
dropcols(),
droprows()
Examples
CalcPcoverage
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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