GenerateSeqDescriptors: GenerateSeqDescriptors

In UriNeri/NeriMisc: Neri's Miscellaneous helper functions

GenerateSeqDescriptors

Usage

GenerateSeqDescriptors(
  dfdt = allmots,
  PrecentRand = 10,
  aacol = "AA_seq",
  HEC_Prob = F,
  AA_Prob = F,
  K.HEC = 3,
  K.aa = 2,
  casecol = "case",
  Exmp_src_faa = rdrps_faa,
  SEED = 123,
  valuecol = "motif_type",
  RemovesSparseCols = T
)

Arguments

dfdt	Input table (data.frame)
PrecentRand	\item aacolColomn name of field with the sequence. \item casecolColumn name for the field splitting the input table to train/test sets. \item valuecolTarget column (try to predict this value) \item RemovesSparseCols

TODO: Need some refactoring but should work. GenerateSeqDescriptors

UriNeri/NeriMisc documentation built on Aug. 13, 2022, 4:37 p.m.