GenericHitsParser: GenericHitsParser

In UriNeri/NeriMisc: Neri's Miscellaneous helper functions

GenericHitsParser

Description

Reads as input search results and parses them consistently.

Usage

GenericHitsParser(
  inpt = "hit.tsv",
  breakhdrs = T,
  input_was = "Scaf_ID_frame",
  Cull_hits = F,
  search_tool = "psiblast",
  reducecols = T,
  calc_pcoverage = T,
  colsnms = "provide",
  CullCol = "score",
  hedsep = ".",
  hedclbs = c("id", "frame")
)

Arguments

inpt	Input path.
hedclbs

Examples

GenericHitsParser

UriNeri/NeriMisc documentation built on Aug. 13, 2022, 4:37 p.m.